Detailed information of SNP:
|
SNP ID:
sf0430756548(Gbrowse)
Chromosome: chr04 Position: 30756548 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.92% | 38.08% |
| All Indica | 799 | 77.60% | 22.40% |
| All Japonica | 496 | 43.95% | 56.05% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 334 | 61.08% | 38.92% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430756548 | T->C | INTERGENIC | None |