Detailed information of SNP:
|
SNP ID:
sf0430757023(Gbrowse)
Chromosome: chr04 Position: 30757023 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.15% | 25.85% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 496 | 44.15% | 55.85% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 61.08% | 38.92% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430757023 | A->G | INTERGENIC | None |