Detailed information of SNP:
|
SNP ID:
sf0430763893(Gbrowse)
Chromosome: chr04 Position: 30763893 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 58.77% | 41.23% |
| All Indica | 790 | 77.47% | 22.53% |
| All Japonica | 491 | 35.03% | 64.97% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 372 | 81.18% | 18.82% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 208 | 63.46% | 36.54% |
| Temperate Japonica | 332 | 48.80% | 51.20% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430763893 | C->T | INTERGENIC | None |