Detailed information of SNP:
|
SNP ID:
sf0430803953(Gbrowse)
Chromosome: chr04 Position: 30803953 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.74% | 24.26% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 43.95% | 56.05% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430803953 | T->C | INTERGENIC | None |