Detailed information of SNP:
|
SNP ID:
sf0430831287(Gbrowse)
Chromosome: chr04 Position: 30831287 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 92.60% | 7.40% |
| All Indica | 795 | 98.87% | 1.13% |
| All Japonica | 489 | 81.60% | 18.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 328 | 73.48% | 26.52% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430831287 | G->T | INTERGENIC | None |