Detailed information of SNP:
|
SNP ID:
sf0430848127(Gbrowse)
Chromosome: chr04 Position: 30848127 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 96.77% | 3.23% |
| All Indica | 789 | 99.75% | 0.25% |
| All Japonica | 457 | 90.81% | 9.19% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.03% | 0.97% |
| Temperate Japonica | 297 | 86.20% | 13.80% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430848127 | G->A | INTERGENIC | None |