Detailed information of SNP:
|
SNP ID:
sf0430849662(Gbrowse)
Chromosome: chr04 Position: 30849662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 85.58% | 14.42% |
| All Indica | 795 | 94.21% | 5.79% |
| All Japonica | 497 | 73.64% | 26.36% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 66.27% | 33.73% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430849662 | G->A | INTERGENIC | None |