Detailed information of SNP:
|
SNP ID:
sf0430858869(Gbrowse)
Chromosome: chr04 Position: 30858869 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 90.79% | 9.21% |
| All Indica | 796 | 97.99% | 2.01% |
| All Japonica | 494 | 77.13% | 22.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 333 | 67.87% | 32.13% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430858869 | C->A | INTERGENIC | None |