Detailed information of SNP:
|
SNP ID:
sf0430891856(Gbrowse)
Chromosome: chr04 Position: 30891856 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 77.40% | 22.60% |
| All Indica | 798 | 87.47% | 12.53% |
| All Japonica | 497 | 64.79% | 35.21% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430891856 | C->T | LOC_Os04g52300(LOC_Os04g52300.1) | INTRON |