Detailed information of SNP:
|
SNP ID:
sf0430893099(Gbrowse)
Chromosome: chr04 Position: 30893099 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.36% | 26.64% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 37.22% | 62.78% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 39.70% | 60.30% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430893099 | T->C | LOC_Os04g52310(LOC_Os04g52310.1) | UTR_3_PRIME |