Detailed information of SNP:
|
SNP ID:
sf0430897815(Gbrowse)
Chromosome: chr04 Position: 30897815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 798 | 18.92% | 81.08% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 14.17% | 85.83% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430897815 | C->T | INTERGENIC | None |