Detailed information of SNP:
|
SNP ID:
sf0430901604(Gbrowse)
Chromosome: chr04 Position: 30901604 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 77.68% | 22.32% |
| All Indica | 797 | 87.70% | 12.30% |
| All Japonica | 497 | 64.19% | 35.81% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 60.00% | 40.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430901604 | C->T | INTERGENIC | None |