Detailed information of SNP:
|
SNP ID:
sf0430909080(Gbrowse)
Chromosome: chr04 Position: 30909080 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.88% | 49.12% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430909080 | T->C | INTERGENIC | None |