Detailed information of SNP:
|
SNP ID:
sf0430909375(Gbrowse)
Chromosome: chr04 Position: 30909375 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.88% | 46.12% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430909375 | C->T | INTERGENIC | None |