Detailed information of SNP:
|
SNP ID:
sf0430910755(Gbrowse)
Chromosome: chr04 Position: 30910755 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430910755 | T->A | LOC_Os04g52330(LOC_Os04g52330.1) | UTR_3_PRIME |