Detailed information of SNP:
|
SNP ID:
sf0430936019(Gbrowse)
Chromosome: chr04 Position: 30936019 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.94% | 48.06% |
| All Indica | 797 | 82.18% | 17.82% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 80.43% | 19.57% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430936019 | G->A | LOC_Os04g52380(LOC_Os04g52380.3) | INTRON |
| sf0430936019 | G->A | LOC_Os04g52380(LOC_Os04g52380.4) | INTRON |
| sf0430936019 | G->A | LOC_Os04g52380(LOC_Os04g52380.1) | INTRON |
| sf0430936019 | G->A | LOC_Os04g52380(LOC_Os04g52380.2) | INTRON |