Detailed information of SNP:
|
SNP ID:
sf0430966627(Gbrowse)
Chromosome: chr04 Position: 30966627 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 78.78% | 21.22% |
| All Indica | 796 | 83.04% | 16.96% |
| All Japonica | 496 | 69.96% | 30.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 334 | 67.07% | 32.93% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430966627 | A->G | LOC_Os04g52420(LOC_Os04g52420.1) | INTRON |