Detailed information of SNP:
|
SNP ID:
sf0430966644(Gbrowse)
Chromosome: chr04 Position: 30966644 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 67.07% | 32.93% |
| All Indica | 795 | 93.08% | 6.92% |
| All Japonica | 496 | 31.65% | 68.35% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 334 | 33.23% | 66.77% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430966644 | T->C | LOC_Os04g52420(LOC_Os04g52420.1) | INTRON |