Detailed information of SNP:
|
SNP ID:
sf0430972665(Gbrowse)
Chromosome: chr04 Position: 30972665 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 88.67% | 11.33% |
| All Indica | 778 | 93.83% | 6.17% |
| All Japonica | 496 | 79.44% | 20.56% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 92.88% | 7.12% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430972665 | C->A | INTERGENIC | None |