Detailed information of SNP:
|
SNP ID:
sf0430973364(Gbrowse)
Chromosome: chr04 Position: 30973364 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 92.46% | 7.54% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 473 | 81.82% | 18.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 76.97% | 23.03% |
| Tropical Japonica | 89 | 94.38% | 5.62% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430973364 | A->G | INTERGENIC | None |