Detailed information of SNP:
|
SNP ID:
sf0430977156(Gbrowse)
Chromosome: chr04 Position: 30977156 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 63.22% | 36.78% |
| All Indica | 794 | 86.90% | 13.10% |
| All Japonica | 495 | 31.52% | 68.48% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 333 | 33.03% | 66.97% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430977156 | G->A | LOC_Os04g52430(LOC_Os04g52430.1) | INTRON |