Detailed information of SNP:
|
SNP ID:
sf0431018152(Gbrowse)
Chromosome: chr04 Position: 31018152 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 94.20% | 5.80% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 479 | 85.59% | 14.41% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 83 | 27.71% | 72.29% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431018152 | C->T | INTERGENIC | None |