Detailed information of SNP:
|
SNP ID:
sf0431051709(Gbrowse)
Chromosome: chr04 Position: 31051709 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.65% | 28.35% |
| All Indica | 798 | 87.34% | 12.66% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431051709 | A->G | INTERGENIC | None |