Detailed information of SNP:
|
SNP ID:
sf0431051933(Gbrowse)
Chromosome: chr04 Position: 31051933 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.12% | 45.88% |
| All Indica | 799 | 80.10% | 19.90% |
| All Japonica | 497 | 20.52% | 79.48% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431051933 | C->T | INTERGENIC | None |