Detailed information of SNP:
|
SNP ID:
sf0431056700(Gbrowse)
Chromosome: chr04 Position: 31056700 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.09% | 32.91% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 26.57% | 73.43% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431056700 | C->T | LOC_Os04g52540(LOC_Os04g52540.1) | Non-Synonymous SNP |