Detailed information of SNP:
|
SNP ID:
sf0431097869(Gbrowse)
Chromosome: chr04 Position: 31097869 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 76.45% | 23.55% |
| All Indica | 793 | 91.05% | 8.95% |
| All Japonica | 494 | 48.99% | 51.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 333 | 30.63% | 69.37% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431097869 | G->C | INTERGENIC | None |