Detailed information of SNP:
|
SNP ID:
sf0431098428(Gbrowse)
Chromosome: chr04 Position: 31098428 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 69.20% | 30.80% |
| All Indica | 796 | 82.79% | 17.21% |
| All Japonica | 497 | 45.07% | 54.93% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 208 | 77.88% | 22.12% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431098428 | T->C | INTERGENIC | None |