Detailed information of SNP:
|
SNP ID:
sf0431113716(Gbrowse)
Chromosome: chr04 Position: 31113716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 87.99% | 12.01% |
| All Indica | 768 | 93.49% | 6.51% |
| All Japonica | 464 | 84.91% | 15.09% |
| Aus | 63 | 36.51% | 63.49% |
| Indica I | 359 | 88.58% | 11.42% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 200 | 97.00% | 3.00% |
| Temperate Japonica | 312 | 98.40% | 1.60% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 59 | 86.44% | 13.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431113716 | C->T | INTERGENIC | None |