Detailed information of SNP:
|
SNP ID:
sf0431113758(Gbrowse)
Chromosome: chr04 Position: 31113758 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.39% | 23.61% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431113758 | T->A | INTERGENIC | None |