Detailed information of SNP:
|
SNP ID:
sf0431117779(Gbrowse)
Chromosome: chr04 Position: 31117779 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 75.55% | 24.45% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431117779 | A->G | LOC_Os04g52614(LOC_Os04g52614.1) | Non-Synonymous SNP |