Detailed information of SNP:
|
SNP ID:
sf0431121856(Gbrowse)
Chromosome: chr04 Position: 31121856 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 65.64% | 34.36% |
| All Indica | 784 | 72.58% | 27.42% |
| All Japonica | 494 | 48.79% | 51.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 201 | 52.74% | 47.26% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 31.34% | 68.66% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431121856 | T->A | LOC_Os04g52614(LOC_Os04g52614.1) | INTRON |