Detailed information of SNP:
|
SNP ID:
sf0431172049(Gbrowse)
Chromosome: chr04 Position: 31172049 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.77% | 25.23% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 47.08% | 52.92% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431172049 | T->C | INTERGENIC | None |