Detailed information of SNP:
|
SNP ID:
sf0431177528(Gbrowse)
Chromosome: chr04 Position: 31177528 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 73.93% | 26.07% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 47.69% | 52.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431177528 | G->A | INTERGENIC | None |