Detailed information of SNP:
|
SNP ID:
sf0431177761(Gbrowse)
Chromosome: chr04 Position: 31177761 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 71.42% | 28.58% |
| All Indica | 793 | 85.25% | 14.75% |
| All Japonica | 495 | 48.08% | 51.92% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 372 | 74.73% | 25.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431177761 | A->G | INTERGENIC | None |