Detailed information of SNP:
|
SNP ID:
sf0431187643(Gbrowse)
Chromosome: chr04 Position: 31187643 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 96.24% | 3.76% |
| All Indica | 780 | 97.56% | 2.44% |
| All Japonica | 482 | 93.78% | 6.22% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 365 | 98.90% | 1.10% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 326 | 93.87% | 6.13% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 84.13% | 15.87% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431187643 | C->T | INTERGENIC | None |