Detailed information of SNP:
|
SNP ID:
sf0431190928(Gbrowse)
Chromosome: chr04 Position: 31190928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 90.79% | 9.21% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 493 | 84.18% | 15.82% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 91 | 40.66% | 59.34% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431190928 | C->T | INTERGENIC | None |