Detailed information of SNP:
|
SNP ID:
sf0431192709(Gbrowse)
Chromosome: chr04 Position: 31192709 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.74% | 8.26% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 495 | 86.26% | 13.74% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 333 | 86.79% | 13.21% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431192709 | G->A | INTERGENIC | None |