Detailed information of SNP:
|
SNP ID:
sf0431202708(Gbrowse)
Chromosome: chr04 Position: 31202708 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.50% | 17.50% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 496 | 69.76% | 30.24% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 334 | 84.73% | 15.27% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431202708 | C->A | INTERGENIC | None |