Detailed information of SNP:
|
SNP ID:
sf0431212341(Gbrowse)
Chromosome: chr04 Position: 31212341 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.71% | 5.29% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431212341 | C->A | INTERGENIC | None |