Detailed information of SNP:
|
SNP ID:
sf0431219958(Gbrowse)
Chromosome: chr04 Position: 31219958 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 94.07% | 5.93% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431219958 | C->T | LOC_Os04g52730(LOC_Os04g52730.1) | INTRON |