Detailed information of SNP:
|
SNP ID:
sf0431226602(Gbrowse)
Chromosome: chr04 Position: 31226602 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 90.10% | 9.90% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 494 | 85.43% | 14.57% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 333 | 84.38% | 15.62% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431226602 | G->A | INTERGENIC | None |