Detailed information of SNP:
|
SNP ID:
sf0431237001(Gbrowse)
Chromosome: chr04 Position: 31237001 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 98.24% | 1.76% |
| All Indica | 786 | 99.62% | 0.38% |
| All Japonica | 466 | 95.92% | 4.08% |
| Aus | 58 | 100.00% | 0.00% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 76.25% | 23.75% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431237001 | C->A | LOC_Os04g52780(LOC_Os04g52780.1) | Synonymous |