Detailed information of SNP:
|
SNP ID:
sf0431242205(Gbrowse)
Chromosome: chr04 Position: 31242205 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.44% | 21.56% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 63.38% | 36.62% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 76.72% | 23.28% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431242205 | C->T | INTERGENIC | None |