Detailed information of SNP:
|
SNP ID:
sf0431245466(Gbrowse)
Chromosome: chr04 Position: 31245466 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 80.79% | 19.21% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 494 | 71.26% | 28.74% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 332 | 60.24% | 39.76% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431245466 | C->T | INTERGENIC | None |