Detailed information of SNP:
|
SNP ID:
sf0431255759(Gbrowse)
Chromosome: chr04 Position: 31255759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 97.06% | 2.94% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 481 | 92.93% | 7.07% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 65.52% | 34.48% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431255759 | C->T | LOC_Os04g52810(LOC_Os04g52810.1) | INTRON |