Detailed information of SNP:



SNP ID: sf0431255759(Gbrowse)

Chromosome: chr04

Position: 31255759
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1396 97.06% 2.94%
All Indica796 99.75% 0.25%
All Japonica481 92.93% 7.07%
Aus66 95.45% 4.55%
Indica I373 100.00% 0.00%
Indica II212 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica331 99.40% 0.60%
Tropical Japonica87 65.52% 34.48%
Japonica Intermediate63 96.83% 3.17%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 94.87% 5.13%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0431255759 C->T LOC_Os04g52810(LOC_Os04g52810.1) INTRON