Detailed information of SNP:
|
SNP ID:
sf0431255875(Gbrowse)
Chromosome: chr04 Position: 31255875 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 58.56% | 41.44% |
| All Indica | 796 | 45.98% | 54.02% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 211 | 21.33% | 78.67% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431255875 | C->A | LOC_Os04g52810(LOC_Os04g52810.1) | INTRON |