Detailed information of SNP:
|
SNP ID:
sf0431256240(Gbrowse)
Chromosome: chr04 Position: 31256240 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 58.58% | 41.42% |
| All Indica | 793 | 45.90% | 54.10% |
| All Japonica | 496 | 74.60% | 25.40% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 53.60% | 46.40% |
| Indica II | 209 | 21.05% | 78.95% |
| Indica Intermediate | 209 | 56.94% | 43.06% |
| Temperate Japonica | 334 | 66.17% | 33.83% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431256240 | T->A | LOC_Os04g52810(LOC_Os04g52810.1) | INTRON |