Detailed information of SNP:
|
SNP ID:
sf0431256914(Gbrowse)
Chromosome: chr04 Position: 31256914 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.32% | 40.68% |
| All Indica | 795 | 46.92% | 53.08% |
| All Japonica | 495 | 74.75% | 25.25% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 372 | 54.30% | 45.70% |
| Indica II | 212 | 23.11% | 76.89% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 333 | 66.67% | 33.33% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431256914 | T->A | LOC_Os04g52810(LOC_Os04g52810.1) | INTRON |