Detailed information of SNP:
|
SNP ID:
sf0431258007(Gbrowse)
Chromosome: chr04 Position: 31258007 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.39% | 41.61% |
| All Indica | 795 | 45.66% | 54.34% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 53.74% | 46.26% |
| Indica II | 211 | 20.85% | 79.15% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 65.97% | 34.03% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431258007 | C->T | LOC_Os04g52810(LOC_Os04g52810.1) | UTR_5_PRIME |