Detailed information of SNP:
|
SNP ID:
sf0431258331(Gbrowse)
Chromosome: chr04 Position: 31258331 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 58.47% | 41.53% |
| All Indica | 796 | 45.73% | 54.27% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 53.74% | 46.26% |
| Indica II | 211 | 20.85% | 79.15% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 66.27% | 33.73% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0431258331 | T->C | INTERGENIC | None |